metabolites {repository} R Documentation

get metabolites data from the database repository

Description

Usage

metabolites(database,
    mzkit = FALSE);

Arguments

database

-

env

[as Environment]

Details

Authors

MetaboLights

Value

this function returns data object in these one of the listed data types: Metabolite, MetaLib.

clr value class

Examples

 require(MetaboLights);
 
 const source_repo = "/path/to/eb-eye_metabolights_complete.xml";
 const data_repo = loadMetaEntries(source_repo) |> as.metaSet();
 const metabos_data = data_repo |> metabolites();
 
 write.csv(metabos_data, file = "/path/to/metabolites.csv");
[Package repository version 1.0.0.0 Index]