set today=`date +%Y-%m-%d`
set predir=stanford-classifier-$today
set dir=/u/nlp/distrib/$predir
set classjar=$dir/stanford-classifier-${today}.jar
set srcjar=$dir/stanford-classifier-src-${today}.jar
set srczip=$dir/stanford-classifier-src-${today}.zip
set doczip=$dir/stanford-classifier-javadoc-${today}.zip


if ( ! $?JAVANLP_HOME ) then

setenv CLASSPATH $JAVANLP_HOME/projects/core/classes


rm -rf $dir
mkdir $dir

cd $dir

perl $JAVANLP_HOME/bin/gen-dependencies.pl -depdump $dir/depdump -classdir $JAVANLP_HOME/projects/core/classes -srcdir $JAVANLP_HOME/projects/core/src -srcjar $srcjar -manifest $JAVANLP_HOME/projects/core/src/edu/stanford/nlp/classify/classifier-manifest.txt -extrasourcefiles edu/stanford/nlp/classify/package.html,edu/stanford/nlp/classify/classifier-manifest.txt -classjar $classjar edu.stanford.nlp.classify.LinearClassifierFactory edu.stanford.nlp.classify.LogConditionalObjectiveFunction edu.stanford.nlp.classify.LogConditionalEqConstraintFunction edu.stanford.nlp.optimization.SQNMinimizer edu.stanford.nlp.classify.AbstractLinearClassifierFactory edu.stanford.nlp.classify.ColumnDataClassifier edu.stanford.nlp.classify.ClassifierExample edu.stanford.nlp.classify.SVMLightClassifier.java edu.stanford.nlp.classify.SVMLightClassifierFactory.java edu.stanford.nlp.ling.CoreAnnotations edu.stanford.nlp.ling.CoreAnnotations\\\$\\\* edu.stanford.nlp.ling.TaggedWordFactory edu.stanford.nlp.ling.WordLemmaTag edu.stanford.nlp.optimization.StochasticDiffFunctionTester

#####
EXTRACTING DEPENDENCIES
#####

Dependency dump file:
	/u/nlp/distrib/stanford-classifier-2012-05-22/depdump
Class directory:
	/user/horatio/releases/v1.3.2/projects/core/classes

java -classpath /u/nlp/java/liball/DependencyFinder.jar:/u/nlp/java/liball/jakarta-oro.jar:/u/nlp/java/liball/log4j.jar:/u/nlp/java/liball/xalan.jar:/u/nlp/java/liball/xercesImpl.jar:/u/nlp/java/liball/xml-apis.jar com.jeantessier.dependencyfinder.cli.DependencyExtractor -maximize -out /u/nlp/distrib/stanford-classifier-2012-05-22/depdump /user/horatio/releases/v1.3.2/projects/core/classes
log4j:WARN No appenders could be found for logger (com.jeantessier.classreader.TransientClassfileLoader).
log4j:WARN Please initialize the log4j system properly.

#####
GENERATING CLOSURE
#####
Dependency dump file:
	/u/nlp/distrib/stanford-classifier-2012-05-22/depdump

Starting classes:
	edu.stanford.nlp.classify.LinearClassifierFactory
	edu.stanford.nlp.classify.LogConditionalObjectiveFunction
	edu.stanford.nlp.classify.LogConditionalEqConstraintFunction
	edu.stanford.nlp.optimization.SQNMinimizer
	edu.stanford.nlp.classify.AbstractLinearClassifierFactory
	edu.stanford.nlp.classify.ColumnDataClassifier
	edu.stanford.nlp.classify.ClassifierExample
	edu.stanford.nlp.classify.SVMLightClassifier.java
	edu.stanford.nlp.classify.SVMLightClassifierFactory.java
	edu.stanford.nlp.ling.CoreAnnotations
	edu.stanford.nlp.ling.CoreAnnotations\$\*
	edu.stanford.nlp.ling.TaggedWordFactory
	edu.stanford.nlp.ling.WordLemmaTag
	edu.stanford.nlp.optimization.StochasticDiffFunctionTester

java -classpath /user/horatio/releases/v1.3.2/projects/core/classes edu.stanford.nlp.misc.DependencyAnalyzer /u/nlp/distrib/stanford-classifier-2012-05-22/depdump edu.stanford.nlp.classify.LinearClassifierFactory edu.stanford.nlp.classify.LogConditionalObjectiveFunction edu.stanford.nlp.classify.LogConditionalEqConstraintFunction edu.stanford.nlp.optimization.SQNMinimizer edu.stanford.nlp.classify.AbstractLinearClassifierFactory edu.stanford.nlp.classify.ColumnDataClassifier edu.stanford.nlp.classify.ClassifierExample edu.stanford.nlp.classify.SVMLightClassifier.java edu.stanford.nlp.classify.SVMLightClassifierFactory.java edu.stanford.nlp.ling.CoreAnnotations edu.stanford.nlp.ling.CoreAnnotations\$\* edu.stanford.nlp.ling.TaggedWordFactory edu.stanford.nlp.ling.WordLemmaTag edu.stanford.nlp.optimization.StochasticDiffFunctionTester
Warning: pattern edu.stanford.nlp.classify.SVMLightClassifier.java matched nothing
Warning: pattern edu.stanford.nlp.classify.SVMLightClassifierFactory.java matched nothing

Class list:
	edu/stanford/nlp/classify/AbstractLinearClassifierFactory.class
	edu/stanford/nlp/classify/AdaptedGaussianPriorObjectiveFunction.class
	edu/stanford/nlp/classify/BiasedLogConditionalObjectiveFunction.class
	edu/stanford/nlp/classify/BiasedLogisticObjectiveFunction.class
	edu/stanford/nlp/classify/Classifier.class
	edu/stanford/nlp/classify/ClassifierCreator.class
	edu/stanford/nlp/classify/ClassifierExample.class
	edu/stanford/nlp/classify/ClassifierFactory.class
	edu/stanford/nlp/classify/ColumnDataClassifier.class
	edu/stanford/nlp/classify/ColumnDataClassifier$Flags.class
	edu/stanford/nlp/classify/CrossValidator.class
	edu/stanford/nlp/classify/CrossValidator$CrossValidationIterator.class
	edu/stanford/nlp/classify/CrossValidator$SavedState.class
	edu/stanford/nlp/classify/Dataset.class
	edu/stanford/nlp/classify/GeneralDataset.class
	edu/stanford/nlp/classify/GeneralDataset$1.class
	edu/stanford/nlp/classify/GeneralizedExpectationObjectiveFunction.class
	edu/stanford/nlp/classify/LinearClassifier.class
	edu/stanford/nlp/classify/LinearClassifierFactory.class
	edu/stanford/nlp/classify/LinearClassifierFactory$1.class
	edu/stanford/nlp/classify/LinearClassifierFactory$2.class
	edu/stanford/nlp/classify/LinearClassifierFactory$LinearClassifierCreator.class
	edu/stanford/nlp/classify/LinearClassifierFactory$NegativeScorer.class
	edu/stanford/nlp/classify/LogConditionalEqConstraintFunction.class
	edu/stanford/nlp/classify/LogConditionalObjectiveFunction.class
	edu/stanford/nlp/classify/LogPrior.class
	edu/stanford/nlp/classify/LogPrior$1.class
	edu/stanford/nlp/classify/LogPrior$LogPriorType.class
	edu/stanford/nlp/classify/LogisticClassifier.class
	edu/stanford/nlp/classify/LogisticClassifierFactory.class
	edu/stanford/nlp/classify/LogisticObjectiveFunction.class
	edu/stanford/nlp/classify/NBLinearClassifierFactory.class
	edu/stanford/nlp/classify/NBLinearClassifierFactory$1.class
	edu/stanford/nlp/classify/NaiveBayesClassifier.class
	edu/stanford/nlp/classify/NaiveBayesClassifierFactory.class
	edu/stanford/nlp/classify/NaiveBayesClassifierFactory$NBWeights.class
	edu/stanford/nlp/classify/NominalDataReader.class
	edu/stanford/nlp/classify/PRCurve.class
	edu/stanford/nlp/classify/ProbabilisticClassifier.class
	edu/stanford/nlp/classify/ProbabilisticClassifierCreator.class
	edu/stanford/nlp/classify/RVFClassifier.class
	edu/stanford/nlp/classify/RVFDataset.class
	edu/stanford/nlp/classify/RVFDataset$1.class
	edu/stanford/nlp/classify/SemiSupervisedLogConditionalObjectiveFunction.class
	edu/stanford/nlp/classify/WeightedDataset.class
	edu/stanford/nlp/io/BZip2PipedOutputStream.class
	edu/stanford/nlp/io/EncodingFileReader.class
	edu/stanford/nlp/io/IOUtils.class
	edu/stanford/nlp/io/IOUtils$1.class
	edu/stanford/nlp/io/IOUtils$1$1.class
	edu/stanford/nlp/io/IOUtils$2.class
	edu/stanford/nlp/io/IOUtils$2$1.class
	edu/stanford/nlp/io/RuntimeIOException.class
	edu/stanford/nlp/ling/AnnotationLookup.class
	edu/stanford/nlp/ling/AnnotationLookup$KeyLookup.class
	edu/stanford/nlp/ling/AnnotationLookup$KeyLookup$1.class
	edu/stanford/nlp/ling/BasicDatum.class
	edu/stanford/nlp/ling/CoreAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations.class
	edu/stanford/nlp/ling/CoreAnnotations$AbbrAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$AbgeneAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$AbstrAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$AfterAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$AnswerAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$AnswerObjectAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$AntecedentAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$ArgDescendentAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$ArgumentAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$BagOfWordsAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$BeAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$BeforeAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$BeginIndexAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$BestCliquesAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$BestFullAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$CalendarAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$CategoryAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$CategoryFunctionalTagAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$CharAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$CharacterOffsetBeginAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$CharacterOffsetEndAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$ChineseCharAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$ChineseIsSegmentedAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$ChineseOrigSegAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$ChineseSegAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$ChunkAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$CoNLLDepAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$CoNLLDepParentIndexAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$CoNLLDepTypeAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$CoNLLPredicateAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$CoNLLSRLAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$CoarseTagAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$CommonWordsAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$ContextsAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$CopyAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$CostMagnificationAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$CovertIDAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$D2_LBeginAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$D2_LEndAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$D2_LMiddleAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$DayAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$DependentsAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$DictAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$DistSimAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$DoAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$DocDateAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$DocIDAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$DomainAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$EndIndexAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$EntityClassAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$EntityRuleAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$EntityTypeAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$FeaturesAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$FemaleGazAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$FirstChildAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$ForcedSentenceEndAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$FreqAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$GazAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$GazetteerAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$GenericTokensAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$GeniaAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$GoldAnswerAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$GovernorAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$GrandparentAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$HaveAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$HeadWordStringAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$HeightAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$IDAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$IDFAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$INAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$IndexAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$InterpretationAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$IsDateRangeAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$IsURLAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$LBeginAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$LEndAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$LMiddleAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$LabelAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$LabelWeightAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$LastGazAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$LastTaggedAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$LeftChildrenNodeAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$LeftTermAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$LemmaAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$LengthAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$MaleGazAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$MarkingAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$MonthAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$MorphoCaseAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$MorphoGenAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$MorphoNumAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$MorphoPersAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$NERIDAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$NamedEntityTagAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$NeighborsAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$NormalizedNamedEntityTagAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$NotAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$NumTxtSentencesAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$NumericCompositeObjectAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$NumericCompositeTypeAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$NumericCompositeValueAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$NumericObjectAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$NumericTypeAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$NumericValueAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$NumerizedTokensAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$OriginalAnswerAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$OriginalCharAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$OriginalTextAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$ParaPositionAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$ParagraphAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$ParagraphsAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$ParentAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$PartOfSpeechAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$PercentAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$PhraseWordsAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$PhraseWordsTagAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$PolarityAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$PositionAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$PossibleAnswersAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$PredictedAnswerAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$PrevChildAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$PriorAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$ProjectedCategoryAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$ProtoAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$RoleAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$SRLIDAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$SRLInstancesAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$SRL_ID.class
	edu/stanford/nlp/ling/CoreAnnotations$SectionAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$SemanticHeadTagAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$SemanticHeadWordAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$SemanticTagAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$SemanticWordAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$SentenceIDAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$SentenceIndexAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$SentencePositionAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$SentencesAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$ShapeAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$SpaceBeforeAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$SpanAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$SpeakerAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$StackedNamedEntityTagAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$StateAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$StemAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$SubcategorizationAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$TagLabelAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$TextAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$TokenBeginAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$TokenEndAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$TokensAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$TopicAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$TrueCaseAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$TrueCaseTextAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$TrueTagAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$UBlockAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$UTypeAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$UnaryAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$UnknownAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$UtteranceAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$ValueAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$VerbSenseAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$WebAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$WordFormAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$WordPositionAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$WordSenseAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$WordnetSynAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$XmlContextAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$XmlElementAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$YearAnnotation.class
	edu/stanford/nlp/ling/CoreLabel.class
	edu/stanford/nlp/ling/CoreLabel$1.class
	edu/stanford/nlp/ling/CoreLabel$CoreLabelFactory.class
	edu/stanford/nlp/ling/CoreLabel$GenericAnnotation.class
	edu/stanford/nlp/ling/Datum.class
	edu/stanford/nlp/ling/Featurizable.class
	edu/stanford/nlp/ling/HasCategory.class
	edu/stanford/nlp/ling/HasContext.class
	edu/stanford/nlp/ling/HasIndex.class
	edu/stanford/nlp/ling/HasOffset.class
	edu/stanford/nlp/ling/HasTag.class
	edu/stanford/nlp/ling/HasWord.class
	edu/stanford/nlp/ling/Label.class
	edu/stanford/nlp/ling/LabelFactory.class
	edu/stanford/nlp/ling/Labeled.class
	edu/stanford/nlp/ling/RVFDatum.class
	edu/stanford/nlp/ling/StringLabel.class
	edu/stanford/nlp/ling/StringLabel$StringLabelFactoryHolder.class
	edu/stanford/nlp/ling/StringLabelFactory.class
	edu/stanford/nlp/ling/TaggedWord.class
	edu/stanford/nlp/ling/TaggedWord$LabelFactoryHolder.class
	edu/stanford/nlp/ling/TaggedWordFactory.class
	edu/stanford/nlp/ling/ValueLabel.class
	edu/stanford/nlp/ling/Word.class
	edu/stanford/nlp/ling/Word$WordFactoryHolder.class
	edu/stanford/nlp/ling/WordFactory.class
	edu/stanford/nlp/ling/WordLemmaTag.class
	edu/stanford/nlp/ling/WordLemmaTagFactory.class
	edu/stanford/nlp/ling/WordTag.class
	edu/stanford/nlp/ling/WordTag$LabelFactoryHolder.class
	edu/stanford/nlp/ling/WordTagFactory.class
	edu/stanford/nlp/math/ADMath.class
	edu/stanford/nlp/math/ArrayMath.class
	edu/stanford/nlp/math/DoubleAD.class
	edu/stanford/nlp/math/SloppyMath.class
	edu/stanford/nlp/objectbank/IdentityFunction.class
	edu/stanford/nlp/objectbank/IteratorFromReaderFactory.class
	edu/stanford/nlp/objectbank/LineIterator.class
	edu/stanford/nlp/objectbank/LineIterator$LineIteratorFactory.class
	edu/stanford/nlp/objectbank/ObjectBank.class
	edu/stanford/nlp/objectbank/ObjectBank$OBIterator.class
	edu/stanford/nlp/objectbank/ReaderIteratorFactory.class
	edu/stanford/nlp/objectbank/ReaderIteratorFactory$ReaderIterator.class
	edu/stanford/nlp/optimization/AbstractCachingDiffFunction.class
	edu/stanford/nlp/optimization/AbstractStochasticCachingDiffFunction.class
	edu/stanford/nlp/optimization/AbstractStochasticCachingDiffFunction$SamplingMethod.class
	edu/stanford/nlp/optimization/AbstractStochasticCachingDiffUpdateFunction.class
	edu/stanford/nlp/optimization/CGMinimizer.class
	edu/stanford/nlp/optimization/CGMinimizer$OneDimDiffFunction.class
	edu/stanford/nlp/optimization/CGMinimizer$Triple.class
	edu/stanford/nlp/optimization/DiffFloatFunction.class
	edu/stanford/nlp/optimization/DiffFunction.class
	edu/stanford/nlp/optimization/Evaluator.class
	edu/stanford/nlp/optimization/FloatFunction.class
	edu/stanford/nlp/optimization/Function.class
	edu/stanford/nlp/optimization/GoldenSectionLineSearch.class
	edu/stanford/nlp/optimization/GoldenSectionLineSearch$1.class
	edu/stanford/nlp/optimization/GoldenSectionLineSearch$2.class
	edu/stanford/nlp/optimization/HasEvaluators.class
	edu/stanford/nlp/optimization/HasInitial.class
	edu/stanford/nlp/optimization/HybridMinimizer.class
	edu/stanford/nlp/optimization/LineSearcher.class
	edu/stanford/nlp/optimization/Minimizer.class
	edu/stanford/nlp/optimization/QNMinimizer.class
	edu/stanford/nlp/optimization/QNMinimizer$1.class
	edu/stanford/nlp/optimization/QNMinimizer$MaxEvaluationsExceeded.class
	edu/stanford/nlp/optimization/QNMinimizer$QNInfo.class
	edu/stanford/nlp/optimization/QNMinimizer$QNInfo$NegativeCurvature.class
	edu/stanford/nlp/optimization/QNMinimizer$QNInfo$ZeroGradient.class
	edu/stanford/nlp/optimization/QNMinimizer$Record.class
	edu/stanford/nlp/optimization/QNMinimizer$SurpriseConvergence.class
	edu/stanford/nlp/optimization/QNMinimizer$eLineSearch.class
	edu/stanford/nlp/optimization/QNMinimizer$eScaling.class
	edu/stanford/nlp/optimization/QNMinimizer$eState.class
	edu/stanford/nlp/optimization/SGDMinimizer.class
	edu/stanford/nlp/optimization/SGDMinimizer$1.class
	edu/stanford/nlp/optimization/SGDToQNMinimizer.class
	edu/stanford/nlp/optimization/SMDMinimizer.class
	edu/stanford/nlp/optimization/SMDMinimizer$1.class
	edu/stanford/nlp/optimization/SMDMinimizer$setLam.class
	edu/stanford/nlp/optimization/SMDMinimizer$setMu.class
	edu/stanford/nlp/optimization/SQNMinimizer.class
	edu/stanford/nlp/optimization/SQNMinimizer$SurpriseConvergence.class
	edu/stanford/nlp/optimization/ScaledSGDMinimizer.class
	edu/stanford/nlp/optimization/ScaledSGDMinimizer$lagrange.class
	edu/stanford/nlp/optimization/ScaledSGDMinimizer$setFixedGain.class
	edu/stanford/nlp/optimization/ScaledSGDMinimizer$weight.class
	edu/stanford/nlp/optimization/StochasticCalculateMethods.class
	edu/stanford/nlp/optimization/StochasticDiffFunctionTester.class
	edu/stanford/nlp/optimization/StochasticInPlaceMinimizer.class
	edu/stanford/nlp/optimization/StochasticInPlaceMinimizer$InvalidElementException.class
	edu/stanford/nlp/optimization/StochasticMinimizer.class
	edu/stanford/nlp/optimization/StochasticMinimizer$InvalidElementException.class
	edu/stanford/nlp/optimization/StochasticMinimizer$PropertySetter.class
	edu/stanford/nlp/optimization/StochasticMinimizer$setGain.class
	edu/stanford/nlp/process/Morpha.class
	edu/stanford/nlp/process/Morphology.class
	edu/stanford/nlp/process/WordShapeClassifier.class
	edu/stanford/nlp/sequences/SeqClassifierFlags.class
	edu/stanford/nlp/stats/AbstractCounter.class
	edu/stanford/nlp/stats/AccuracyStats.class
	edu/stanford/nlp/stats/ClassicCounter.class
	edu/stanford/nlp/stats/ClassicCounter$1.class
	edu/stanford/nlp/stats/ClassicCounter$1$1.class
	edu/stanford/nlp/stats/ClassicCounter$2.class
	edu/stanford/nlp/stats/ClassicCounter$2$1.class
	edu/stanford/nlp/stats/ClassicCounter$2$1$1.class
	edu/stanford/nlp/stats/ClassicCounter$ClassicCounterFactory.class
	edu/stanford/nlp/stats/Counter.class
	edu/stanford/nlp/stats/Counters.class
	edu/stanford/nlp/stats/Counters$1.class
	edu/stanford/nlp/stats/Counters$2.class
	edu/stanford/nlp/stats/Counters$3.class
	edu/stanford/nlp/stats/Counters$4.class
	edu/stanford/nlp/stats/Counters$5.class
	edu/stanford/nlp/stats/Counters$6.class
	edu/stanford/nlp/stats/Counters$6$1.class
	edu/stanford/nlp/stats/Counters$6$1$1.class
	edu/stanford/nlp/stats/Counters$6$1$1$1.class
	edu/stanford/nlp/stats/Counters$7.class
	edu/stanford/nlp/stats/Counters$7$1.class
	edu/stanford/nlp/stats/Counters$7$1$1.class
	edu/stanford/nlp/stats/Counters$7$1$1$1.class
	edu/stanford/nlp/stats/Counters$7$2.class
	edu/stanford/nlp/stats/Counters$7$3.class
	edu/stanford/nlp/stats/Counters$7$3$1.class
	edu/stanford/nlp/stats/Counters$7$4.class
	edu/stanford/nlp/stats/Counters$7$4$1.class
	edu/stanford/nlp/stats/Counters$8.class
	edu/stanford/nlp/stats/Distribution.class
	edu/stanford/nlp/stats/Distribution$1.class
	edu/stanford/nlp/stats/Distribution$DynamicDistribution.class
	edu/stanford/nlp/stats/IntCounter.class
	edu/stanford/nlp/stats/IntCounter$1.class
	edu/stanford/nlp/stats/IntCounter$1$1.class
	edu/stanford/nlp/stats/IntCounter$1$1$1.class
	edu/stanford/nlp/stats/IntCounter$2.class
	edu/stanford/nlp/stats/IntCounter$3.class
	edu/stanford/nlp/stats/IntCounter$3$1.class
	edu/stanford/nlp/stats/IntCounter$NaturalComparator.class
	edu/stanford/nlp/stats/MultiClassAccuracyStats.class
	edu/stanford/nlp/stats/ProbabilityDistribution.class
	edu/stanford/nlp/stats/Sampler.class
	edu/stanford/nlp/stats/Scorer.class
	edu/stanford/nlp/stats/SimpleGoodTuring.class
	edu/stanford/nlp/stats/TwoDimensionalCounter.class
	edu/stanford/nlp/stats/TwoDimensionalCounterInterface.class
	edu/stanford/nlp/util/AbstractIterator.class
	edu/stanford/nlp/util/ArrayCoreMap.class
	edu/stanford/nlp/util/ArrayCoreMap$1.class
	edu/stanford/nlp/util/ArrayCoreMap$1$1.class
	edu/stanford/nlp/util/ArrayCoreMap$2.class
	edu/stanford/nlp/util/ArrayIterable.class
	edu/stanford/nlp/util/ArrayIterable$1.class
	edu/stanford/nlp/util/ArrayMap.class
	edu/stanford/nlp/util/ArrayMap$1.class
	edu/stanford/nlp/util/ArrayMap$Entry.class
	edu/stanford/nlp/util/ArrayUtils.class
	edu/stanford/nlp/util/BinaryHeapPriorityQueue.class
	edu/stanford/nlp/util/BinaryHeapPriorityQueue$1.class
	edu/stanford/nlp/util/BinaryHeapPriorityQueue$Entry.class
	edu/stanford/nlp/util/ByteStreamGobbler.class
	edu/stanford/nlp/util/CollectionFactory.class
	edu/stanford/nlp/util/CollectionFactory$ArrayListFactory.class
	edu/stanford/nlp/util/CollectionFactory$HashSetFactory.class
	edu/stanford/nlp/util/CollectionFactory$LinkedListFactory.class
	edu/stanford/nlp/util/CollectionFactory$SizedArrayListFactory.class
	edu/stanford/nlp/util/CollectionFactory$TreeSetFactory.class
	edu/stanford/nlp/util/CollectionUtils.class
	edu/stanford/nlp/util/CollectionUtils$1.class
	edu/stanford/nlp/util/CoreMap.class
	edu/stanford/nlp/util/ErasureUtils.class
	edu/stanford/nlp/util/Factory.class
	edu/stanford/nlp/util/Filter.class
	edu/stanford/nlp/util/FixedPrioritiesPriorityQueue.class
	edu/stanford/nlp/util/Function.class
	edu/stanford/nlp/util/Generics.class
	edu/stanford/nlp/util/HasInterval.class
	edu/stanford/nlp/util/HasInterval$1.class
	edu/stanford/nlp/util/HashIndex.class
	edu/stanford/nlp/util/HashIndex$1.class
	edu/stanford/nlp/util/HashIndex$2.class
	edu/stanford/nlp/util/HashableCoreMap.class
	edu/stanford/nlp/util/HashableCoreMap$HashableCoreMapException.class
	edu/stanford/nlp/util/Index.class
	edu/stanford/nlp/util/IntPair.class
	edu/stanford/nlp/util/IntQuadruple.class
	edu/stanford/nlp/util/IntTriple.class
	edu/stanford/nlp/util/IntTuple.class
	edu/stanford/nlp/util/IntUni.class
	edu/stanford/nlp/util/Interner.class
	edu/stanford/nlp/util/Interval.class
	edu/stanford/nlp/util/Interval$RelType.class
	edu/stanford/nlp/util/IterableIterator.class
	edu/stanford/nlp/util/MapFactory.class
	edu/stanford/nlp/util/MapFactory$1.class
	edu/stanford/nlp/util/MapFactory$ArrayMapFactory.class
	edu/stanford/nlp/util/MapFactory$HashMapFactory.class
	edu/stanford/nlp/util/MapFactory$IdentityHashMapFactory.class
	edu/stanford/nlp/util/MapFactory$LinkedHashMapFactory.class
	edu/stanford/nlp/util/MapFactory$TreeMapFactory.class
	edu/stanford/nlp/util/MapFactory$WeakHashMapFactory.class
	edu/stanford/nlp/util/MetaClass.class
	edu/stanford/nlp/util/MetaClass$1.class
	edu/stanford/nlp/util/MetaClass$ClassCreationException.class
	edu/stanford/nlp/util/MetaClass$ClassFactory.class
	edu/stanford/nlp/util/MetaClass$ConstructorNotFoundException.class
	edu/stanford/nlp/util/MutableDouble.class
	edu/stanford/nlp/util/MutableInteger.class
	edu/stanford/nlp/util/Pair.class
	edu/stanford/nlp/util/Pair$1.class
	edu/stanford/nlp/util/Pair$MutableInternedPair.class
	edu/stanford/nlp/util/PriorityQueue.class
	edu/stanford/nlp/util/ReflectionLoading.class
	edu/stanford/nlp/util/ReflectionLoading$ReflectionLoadingException.class
	edu/stanford/nlp/util/Scored.class
	edu/stanford/nlp/util/ScoredComparator.class
	edu/stanford/nlp/util/ScoredObject.class
	edu/stanford/nlp/util/Sets.class
	edu/stanford/nlp/util/StreamGobbler.class
	edu/stanford/nlp/util/StringUtils.class
	edu/stanford/nlp/util/StringUtils$1.class
	edu/stanford/nlp/util/Timing.class
	edu/stanford/nlp/util/Triple.class
	edu/stanford/nlp/util/TypesafeMap.class
	edu/stanford/nlp/util/TypesafeMap$Key.class
	edu/stanford/nlp/util/concurrent/SynchronizedInterner.class
	edu/stanford/nlp/util/concurrent/SynchronizedInterner$1.class
	edu/stanford/nlp/util/logging/Color.class
	edu/stanford/nlp/util/logging/LogRecordHandler.class
	edu/stanford/nlp/util/logging/OutputHandler.class
	edu/stanford/nlp/util/logging/OutputHandler$1.class
	edu/stanford/nlp/util/logging/OutputHandler$TrackInfo.class
	edu/stanford/nlp/util/logging/PrettyLoggable.class
	edu/stanford/nlp/util/logging/PrettyLogger.class
	edu/stanford/nlp/util/logging/PrettyLogger$1.class
	edu/stanford/nlp/util/logging/Redwood.class
	edu/stanford/nlp/util/logging/Redwood$1.class
	edu/stanford/nlp/util/logging/Redwood$2.class
	edu/stanford/nlp/util/logging/Redwood$3.class
	edu/stanford/nlp/util/logging/Redwood$4.class
	edu/stanford/nlp/util/logging/Redwood$5.class
	edu/stanford/nlp/util/logging/Redwood$6.class
	edu/stanford/nlp/util/logging/Redwood$7.class
	edu/stanford/nlp/util/logging/Redwood$ConsoleHandler.class
	edu/stanford/nlp/util/logging/Redwood$FileHandler.class
	edu/stanford/nlp/util/logging/Redwood$Flag.class
	edu/stanford/nlp/util/logging/Redwood$MessageType.class
	edu/stanford/nlp/util/logging/Redwood$Record.class
	edu/stanford/nlp/util/logging/Redwood$Record$1.class
	edu/stanford/nlp/util/logging/Redwood$RecordHandlerTree.class
	edu/stanford/nlp/util/logging/Redwood$RecordHandlerTree$1.class
	edu/stanford/nlp/util/logging/Redwood$RedwoodChannels.class
	edu/stanford/nlp/util/logging/Redwood$Util.class
	edu/stanford/nlp/util/logging/Redwood$Util$1.class
	edu/stanford/nlp/util/logging/Redwood$Util$Tantrum.class
	edu/stanford/nlp/util/logging/RedwoodConfiguration.class
	edu/stanford/nlp/util/logging/RedwoodConfiguration$1.class
	edu/stanford/nlp/util/logging/RedwoodConfiguration$10.class
	edu/stanford/nlp/util/logging/RedwoodConfiguration$11.class
	edu/stanford/nlp/util/logging/RedwoodConfiguration$12.class
	edu/stanford/nlp/util/logging/RedwoodConfiguration$12$1.class
	edu/stanford/nlp/util/logging/RedwoodConfiguration$13.class
	edu/stanford/nlp/util/logging/RedwoodConfiguration$14.class
	edu/stanford/nlp/util/logging/RedwoodConfiguration$15.class
	edu/stanford/nlp/util/logging/RedwoodConfiguration$2.class
	edu/stanford/nlp/util/logging/RedwoodConfiguration$3.class
	edu/stanford/nlp/util/logging/RedwoodConfiguration$4.class
	edu/stanford/nlp/util/logging/RedwoodConfiguration$5.class
	edu/stanford/nlp/util/logging/RedwoodConfiguration$6.class
	edu/stanford/nlp/util/logging/RedwoodConfiguration$7.class
	edu/stanford/nlp/util/logging/RedwoodConfiguration$8.class
	edu/stanford/nlp/util/logging/RedwoodConfiguration$9.class
	edu/stanford/nlp/util/logging/RedwoodPrintStream.class
	edu/stanford/nlp/util/logging/RedwoodPrintStream$1.class
	edu/stanford/nlp/util/logging/RepeatedRecordHandler.class
	edu/stanford/nlp/util/logging/RepeatedRecordHandler$1.class
	edu/stanford/nlp/util/logging/RepeatedRecordHandler$ApproximateRepeatSemantics.class
	edu/stanford/nlp/util/logging/RepeatedRecordHandler$ExactRepeatSemantics.class
	edu/stanford/nlp/util/logging/RepeatedRecordHandler$PendingType.class
	edu/stanford/nlp/util/logging/RepeatedRecordHandler$RepeatSemantics.class
	edu/stanford/nlp/util/logging/RepeatedRecordHandler$RepeatedRecordInfo.class
	edu/stanford/nlp/util/logging/Style.class
	edu/stanford/nlp/util/logging/VisibilityHandler.class
	edu/stanford/nlp/util/logging/VisibilityHandler$1.class
	edu/stanford/nlp/util/logging/VisibilityHandler$State.class


#####
GENERATING JAR FILE
#####

JAR file:
	/u/nlp/distrib/stanford-classifier-2012-05-22/stanford-classifier-2012-05-22.jar
Root directory:
	/user/horatio/releases/v1.3.2/projects/core/classes

jar cfm /juicy/u44/u/nlp/distrib/stanford-classifier-2012-05-22/stanford-classifier-2012-05-22.jar /user/horatio/releases/v1.3.2/projects/core/src/edu/stanford/nlp/classify/classifier-manifest.txt edu/stanford/nlp/classify/AbstractLinearClassifierFactory.class \
 edu/stanford/nlp/classify/AdaptedGaussianPriorObjectiveFunction.class \
 edu/stanford/nlp/classify/BiasedLogConditionalObjectiveFunction.class \
 edu/stanford/nlp/classify/BiasedLogisticObjectiveFunction.class \
 edu/stanford/nlp/classify/Classifier.class \
 edu/stanford/nlp/classify/ClassifierCreator.class \
 edu/stanford/nlp/classify/ClassifierExample.class \
 edu/stanford/nlp/classify/ClassifierFactory.class \
 edu/stanford/nlp/classify/ColumnDataClassifier.class \
 edu/stanford/nlp/classify/ColumnDataClassifier\$Flags.class \
 edu/stanford/nlp/classify/CrossValidator.class \
 edu/stanford/nlp/classify/CrossValidator\$CrossValidationIterator.class \
 edu/stanford/nlp/classify/CrossValidator\$SavedState.class \
 edu/stanford/nlp/classify/Dataset.class \
 edu/stanford/nlp/classify/GeneralDataset.class \
 edu/stanford/nlp/classify/GeneralDataset\$1.class \
 edu/stanford/nlp/classify/GeneralizedExpectationObjectiveFunction.class \
 edu/stanford/nlp/classify/LinearClassifier.class \
 edu/stanford/nlp/classify/LinearClassifierFactory.class \
 edu/stanford/nlp/classify/LinearClassifierFactory\$1.class \
 edu/stanford/nlp/classify/LinearClassifierFactory\$2.class \
 edu/stanford/nlp/classify/LinearClassifierFactory\$LinearClassifierCreator.class \
 edu/stanford/nlp/classify/LinearClassifierFactory\$NegativeScorer.class \
 edu/stanford/nlp/classify/LogConditionalEqConstraintFunction.class \
 edu/stanford/nlp/classify/LogConditionalObjectiveFunction.class \
 edu/stanford/nlp/classify/LogPrior.class \
 edu/stanford/nlp/classify/LogPrior\$1.class \
 edu/stanford/nlp/classify/LogPrior\$LogPriorType.class \
 edu/stanford/nlp/classify/LogisticClassifier.class \
 edu/stanford/nlp/classify/LogisticClassifierFactory.class \
 edu/stanford/nlp/classify/LogisticObjectiveFunction.class \
 edu/stanford/nlp/classify/NBLinearClassifierFactory.class \
 edu/stanford/nlp/classify/NBLinearClassifierFactory\$1.class \
 edu/stanford/nlp/classify/NaiveBayesClassifier.class \
 edu/stanford/nlp/classify/NaiveBayesClassifierFactory.class \
 edu/stanford/nlp/classify/NaiveBayesClassifierFactory\$NBWeights.class \
 edu/stanford/nlp/classify/NominalDataReader.class \
 edu/stanford/nlp/classify/PRCurve.class \
 edu/stanford/nlp/classify/ProbabilisticClassifier.class \
 edu/stanford/nlp/classify/ProbabilisticClassifierCreator.class \
 edu/stanford/nlp/classify/RVFClassifier.class \
 edu/stanford/nlp/classify/RVFDataset.class \
 edu/stanford/nlp/classify/RVFDataset\$1.class \
 edu/stanford/nlp/classify/SemiSupervisedLogConditionalObjectiveFunction.class \
 edu/stanford/nlp/classify/WeightedDataset.class \
 edu/stanford/nlp/io/BZip2PipedOutputStream.class \
 edu/stanford/nlp/io/EncodingFileReader.class \
 edu/stanford/nlp/io/IOUtils.class \
 edu/stanford/nlp/io/IOUtils\$1.class \
 edu/stanford/nlp/io/IOUtils\$1\$1.class \
 edu/stanford/nlp/io/IOUtils\$2.class \
 edu/stanford/nlp/io/IOUtils\$2\$1.class \
 edu/stanford/nlp/io/RuntimeIOException.class \
 edu/stanford/nlp/ling/AnnotationLookup.class \
 edu/stanford/nlp/ling/AnnotationLookup\$KeyLookup.class \
 edu/stanford/nlp/ling/AnnotationLookup\$KeyLookup\$1.class \
 edu/stanford/nlp/ling/BasicDatum.class \
 edu/stanford/nlp/ling/CoreAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations.class \
 edu/stanford/nlp/ling/CoreAnnotations\$AbbrAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$AbgeneAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$AbstrAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$AfterAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$AnswerAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$AnswerObjectAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$AntecedentAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$ArgDescendentAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$ArgumentAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$BagOfWordsAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$BeAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$BeforeAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$BeginIndexAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$BestCliquesAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$BestFullAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$CalendarAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$CategoryAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$CategoryFunctionalTagAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$CharAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$CharacterOffsetBeginAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$CharacterOffsetEndAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$ChineseCharAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$ChineseIsSegmentedAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$ChineseOrigSegAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$ChineseSegAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$ChunkAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$CoNLLDepAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$CoNLLDepParentIndexAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$CoNLLDepTypeAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$CoNLLPredicateAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$CoNLLSRLAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$CoarseTagAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$CommonWordsAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$ContextsAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$CopyAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$CostMagnificationAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$CovertIDAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$D2_LBeginAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$D2_LEndAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$D2_LMiddleAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$DayAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$DependentsAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$DictAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$DistSimAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$DoAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$DocDateAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$DocIDAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$DomainAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$EndIndexAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$EntityClassAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$EntityRuleAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$EntityTypeAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$FeaturesAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$FemaleGazAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$FirstChildAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$ForcedSentenceEndAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$FreqAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$GazAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$GazetteerAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$GenericTokensAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$GeniaAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$GoldAnswerAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$GovernorAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$GrandparentAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$HaveAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$HeadWordStringAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$HeightAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$IDAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$IDFAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$INAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$IndexAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$InterpretationAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$IsDateRangeAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$IsURLAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$LBeginAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$LEndAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$LMiddleAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$LabelAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$LabelWeightAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$LastGazAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$LastTaggedAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$LeftChildrenNodeAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$LeftTermAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$LemmaAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$LengthAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$MaleGazAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$MarkingAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$MonthAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$MorphoCaseAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$MorphoGenAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$MorphoNumAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$MorphoPersAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$NERIDAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$NamedEntityTagAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$NeighborsAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$NormalizedNamedEntityTagAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$NotAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$NumTxtSentencesAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$NumericCompositeObjectAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$NumericCompositeTypeAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$NumericCompositeValueAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$NumericObjectAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$NumericTypeAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$NumericValueAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$NumerizedTokensAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$OriginalAnswerAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$OriginalCharAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$OriginalTextAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$ParaPositionAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$ParagraphAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$ParagraphsAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$ParentAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$PartOfSpeechAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$PercentAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$PhraseWordsAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$PhraseWordsTagAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$PolarityAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$PositionAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$PossibleAnswersAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$PredictedAnswerAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$PrevChildAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$PriorAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$ProjectedCategoryAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$ProtoAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$RoleAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$SRLIDAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$SRLInstancesAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$SRL_ID.class \
 edu/stanford/nlp/ling/CoreAnnotations\$SectionAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$SemanticHeadTagAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$SemanticHeadWordAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$SemanticTagAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$SemanticWordAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$SentenceIDAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$SentenceIndexAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$SentencePositionAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$SentencesAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$ShapeAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$SpaceBeforeAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$SpanAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$SpeakerAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$StackedNamedEntityTagAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$StateAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$StemAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$SubcategorizationAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$TagLabelAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$TextAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$TokenBeginAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$TokenEndAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$TokensAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$TopicAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$TrueCaseAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$TrueCaseTextAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$TrueTagAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$UBlockAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$UTypeAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$UnaryAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$UnknownAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$UtteranceAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$ValueAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$VerbSenseAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$WebAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$WordFormAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$WordPositionAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$WordSenseAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$WordnetSynAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$XmlContextAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$XmlElementAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$YearAnnotation.class \
 edu/stanford/nlp/ling/CoreLabel.class \
 edu/stanford/nlp/ling/CoreLabel\$1.class \
 edu/stanford/nlp/ling/CoreLabel\$CoreLabelFactory.class \
 edu/stanford/nlp/ling/CoreLabel\$GenericAnnotation.class \
 edu/stanford/nlp/ling/Datum.class \
 edu/stanford/nlp/ling/Featurizable.class \
 edu/stanford/nlp/ling/HasCategory.class \
 edu/stanford/nlp/ling/HasContext.class \
 edu/stanford/nlp/ling/HasIndex.class \
 edu/stanford/nlp/ling/HasOffset.class \
 edu/stanford/nlp/ling/HasTag.class \
 edu/stanford/nlp/ling/HasWord.class \
 edu/stanford/nlp/ling/Label.class \
 edu/stanford/nlp/ling/LabelFactory.class \
 edu/stanford/nlp/ling/Labeled.class \
 edu/stanford/nlp/ling/RVFDatum.class \
 edu/stanford/nlp/ling/StringLabel.class \
 edu/stanford/nlp/ling/StringLabel\$StringLabelFactoryHolder.class \
 edu/stanford/nlp/ling/StringLabelFactory.class \
 edu/stanford/nlp/ling/TaggedWord.class \
 edu/stanford/nlp/ling/TaggedWord\$LabelFactoryHolder.class \
 edu/stanford/nlp/ling/TaggedWordFactory.class \
 edu/stanford/nlp/ling/ValueLabel.class \
 edu/stanford/nlp/ling/Word.class \
 edu/stanford/nlp/ling/Word\$WordFactoryHolder.class \
 edu/stanford/nlp/ling/WordFactory.class \
 edu/stanford/nlp/ling/WordLemmaTag.class \
 edu/stanford/nlp/ling/WordLemmaTagFactory.class \
 edu/stanford/nlp/ling/WordTag.class \
 edu/stanford/nlp/ling/WordTag\$LabelFactoryHolder.class \
 edu/stanford/nlp/ling/WordTagFactory.class \
 edu/stanford/nlp/math/ADMath.class \
 edu/stanford/nlp/math/ArrayMath.class \
 edu/stanford/nlp/math/DoubleAD.class \
 edu/stanford/nlp/math/SloppyMath.class \
 edu/stanford/nlp/objectbank/IdentityFunction.class \
 edu/stanford/nlp/objectbank/IteratorFromReaderFactory.class \
 edu/stanford/nlp/objectbank/LineIterator.class \
 edu/stanford/nlp/objectbank/LineIterator\$LineIteratorFactory.class \
 edu/stanford/nlp/objectbank/ObjectBank.class \
 edu/stanford/nlp/objectbank/ObjectBank\$OBIterator.class \
 edu/stanford/nlp/objectbank/ReaderIteratorFactory.class \
 edu/stanford/nlp/objectbank/ReaderIteratorFactory\$ReaderIterator.class \
 edu/stanford/nlp/optimization/AbstractCachingDiffFunction.class \
 edu/stanford/nlp/optimization/AbstractStochasticCachingDiffFunction.class \
 edu/stanford/nlp/optimization/AbstractStochasticCachingDiffFunction\$SamplingMethod.class \
 edu/stanford/nlp/optimization/AbstractStochasticCachingDiffUpdateFunction.class \
 edu/stanford/nlp/optimization/CGMinimizer.class \
 edu/stanford/nlp/optimization/CGMinimizer\$OneDimDiffFunction.class \
 edu/stanford/nlp/optimization/CGMinimizer\$Triple.class \
 edu/stanford/nlp/optimization/DiffFloatFunction.class \
 edu/stanford/nlp/optimization/DiffFunction.class \
 edu/stanford/nlp/optimization/Evaluator.class \
 edu/stanford/nlp/optimization/FloatFunction.class \
 edu/stanford/nlp/optimization/Function.class \
 edu/stanford/nlp/optimization/GoldenSectionLineSearch.class \
 edu/stanford/nlp/optimization/GoldenSectionLineSearch\$1.class \
 edu/stanford/nlp/optimization/GoldenSectionLineSearch\$2.class \
 edu/stanford/nlp/optimization/HasEvaluators.class \
 edu/stanford/nlp/optimization/HasInitial.class \
 edu/stanford/nlp/optimization/HybridMinimizer.class \
 edu/stanford/nlp/optimization/LineSearcher.class \
 edu/stanford/nlp/optimization/Minimizer.class \
 edu/stanford/nlp/optimization/QNMinimizer.class \
 edu/stanford/nlp/optimization/QNMinimizer\$1.class \
 edu/stanford/nlp/optimization/QNMinimizer\$MaxEvaluationsExceeded.class \
 edu/stanford/nlp/optimization/QNMinimizer\$QNInfo.class \
 edu/stanford/nlp/optimization/QNMinimizer\$QNInfo\$NegativeCurvature.class \
 edu/stanford/nlp/optimization/QNMinimizer\$QNInfo\$ZeroGradient.class \
 edu/stanford/nlp/optimization/QNMinimizer\$Record.class \
 edu/stanford/nlp/optimization/QNMinimizer\$SurpriseConvergence.class \
 edu/stanford/nlp/optimization/QNMinimizer\$eLineSearch.class \
 edu/stanford/nlp/optimization/QNMinimizer\$eScaling.class \
 edu/stanford/nlp/optimization/QNMinimizer\$eState.class \
 edu/stanford/nlp/optimization/SGDMinimizer.class \
 edu/stanford/nlp/optimization/SGDMinimizer\$1.class \
 edu/stanford/nlp/optimization/SGDToQNMinimizer.class \
 edu/stanford/nlp/optimization/SMDMinimizer.class \
 edu/stanford/nlp/optimization/SMDMinimizer\$1.class \
 edu/stanford/nlp/optimization/SMDMinimizer\$setLam.class \
 edu/stanford/nlp/optimization/SMDMinimizer\$setMu.class \
 edu/stanford/nlp/optimization/SQNMinimizer.class \
 edu/stanford/nlp/optimization/SQNMinimizer\$SurpriseConvergence.class \
 edu/stanford/nlp/optimization/ScaledSGDMinimizer.class \
 edu/stanford/nlp/optimization/ScaledSGDMinimizer\$lagrange.class \
 edu/stanford/nlp/optimization/ScaledSGDMinimizer\$setFixedGain.class \
 edu/stanford/nlp/optimization/ScaledSGDMinimizer\$weight.class \
 edu/stanford/nlp/optimization/StochasticCalculateMethods.class \
 edu/stanford/nlp/optimization/StochasticDiffFunctionTester.class \
 edu/stanford/nlp/optimization/StochasticInPlaceMinimizer.class \
 edu/stanford/nlp/optimization/StochasticInPlaceMinimizer\$InvalidElementException.class \
 edu/stanford/nlp/optimization/StochasticMinimizer.class \
 edu/stanford/nlp/optimization/StochasticMinimizer\$InvalidElementException.class \
 edu/stanford/nlp/optimization/StochasticMinimizer\$PropertySetter.class \
 edu/stanford/nlp/optimization/StochasticMinimizer\$setGain.class \
 edu/stanford/nlp/process/Morpha.class \
 edu/stanford/nlp/process/Morphology.class \
 edu/stanford/nlp/process/WordShapeClassifier.class \
 edu/stanford/nlp/sequences/SeqClassifierFlags.class \
 edu/stanford/nlp/stats/AbstractCounter.class \
 edu/stanford/nlp/stats/AccuracyStats.class \
 edu/stanford/nlp/stats/ClassicCounter.class \
 edu/stanford/nlp/stats/ClassicCounter\$1.class \
 edu/stanford/nlp/stats/ClassicCounter\$1\$1.class \
 edu/stanford/nlp/stats/ClassicCounter\$2.class \
 edu/stanford/nlp/stats/ClassicCounter\$2\$1.class \
 edu/stanford/nlp/stats/ClassicCounter\$2\$1\$1.class \
 edu/stanford/nlp/stats/ClassicCounter\$ClassicCounterFactory.class \
 edu/stanford/nlp/stats/Counter.class \
 edu/stanford/nlp/stats/Counters.class \
 edu/stanford/nlp/stats/Counters\$1.class \
 edu/stanford/nlp/stats/Counters\$2.class \
 edu/stanford/nlp/stats/Counters\$3.class \
 edu/stanford/nlp/stats/Counters\$4.class \
 edu/stanford/nlp/stats/Counters\$5.class \
 edu/stanford/nlp/stats/Counters\$6.class \
 edu/stanford/nlp/stats/Counters\$6\$1.class \
 edu/stanford/nlp/stats/Counters\$6\$1\$1.class \
 edu/stanford/nlp/stats/Counters\$6\$1\$1\$1.class \
 edu/stanford/nlp/stats/Counters\$7.class \
 edu/stanford/nlp/stats/Counters\$7\$1.class \
 edu/stanford/nlp/stats/Counters\$7\$1\$1.class \
 edu/stanford/nlp/stats/Counters\$7\$1\$1\$1.class \
 edu/stanford/nlp/stats/Counters\$7\$2.class \
 edu/stanford/nlp/stats/Counters\$7\$3.class \
 edu/stanford/nlp/stats/Counters\$7\$3\$1.class \
 edu/stanford/nlp/stats/Counters\$7\$4.class \
 edu/stanford/nlp/stats/Counters\$7\$4\$1.class \
 edu/stanford/nlp/stats/Counters\$8.class \
 edu/stanford/nlp/stats/Distribution.class \
 edu/stanford/nlp/stats/Distribution\$1.class \
 edu/stanford/nlp/stats/Distribution\$DynamicDistribution.class \
 edu/stanford/nlp/stats/IntCounter.class \
 edu/stanford/nlp/stats/IntCounter\$1.class \
 edu/stanford/nlp/stats/IntCounter\$1\$1.class \
 edu/stanford/nlp/stats/IntCounter\$1\$1\$1.class \
 edu/stanford/nlp/stats/IntCounter\$2.class \
 edu/stanford/nlp/stats/IntCounter\$3.class \
 edu/stanford/nlp/stats/IntCounter\$3\$1.class \
 edu/stanford/nlp/stats/IntCounter\$NaturalComparator.class \
 edu/stanford/nlp/stats/MultiClassAccuracyStats.class \
 edu/stanford/nlp/stats/ProbabilityDistribution.class \
 edu/stanford/nlp/stats/Sampler.class \
 edu/stanford/nlp/stats/Scorer.class \
 edu/stanford/nlp/stats/SimpleGoodTuring.class \
 edu/stanford/nlp/stats/TwoDimensionalCounter.class \
 edu/stanford/nlp/stats/TwoDimensionalCounterInterface.class \
 edu/stanford/nlp/util/AbstractIterator.class \
 edu/stanford/nlp/util/ArrayCoreMap.class \
 edu/stanford/nlp/util/ArrayCoreMap\$1.class \
 edu/stanford/nlp/util/ArrayCoreMap\$1\$1.class \
 edu/stanford/nlp/util/ArrayCoreMap\$2.class \
 edu/stanford/nlp/util/ArrayIterable.class \
 edu/stanford/nlp/util/ArrayIterable\$1.class \
 edu/stanford/nlp/util/ArrayMap.class \
 edu/stanford/nlp/util/ArrayMap\$1.class \
 edu/stanford/nlp/util/ArrayMap\$Entry.class \
 edu/stanford/nlp/util/ArrayUtils.class \
 edu/stanford/nlp/util/BinaryHeapPriorityQueue.class \
 edu/stanford/nlp/util/BinaryHeapPriorityQueue\$1.class \
 edu/stanford/nlp/util/BinaryHeapPriorityQueue\$Entry.class \
 edu/stanford/nlp/util/ByteStreamGobbler.class \
 edu/stanford/nlp/util/CollectionFactory.class \
 edu/stanford/nlp/util/CollectionFactory\$ArrayListFactory.class \
 edu/stanford/nlp/util/CollectionFactory\$HashSetFactory.class \
 edu/stanford/nlp/util/CollectionFactory\$LinkedListFactory.class \
 edu/stanford/nlp/util/CollectionFactory\$SizedArrayListFactory.class \
 edu/stanford/nlp/util/CollectionFactory\$TreeSetFactory.class \
 edu/stanford/nlp/util/CollectionUtils.class \
 edu/stanford/nlp/util/CollectionUtils\$1.class \
 edu/stanford/nlp/util/CoreMap.class \
 edu/stanford/nlp/util/ErasureUtils.class \
 edu/stanford/nlp/util/Factory.class \
 edu/stanford/nlp/util/Filter.class \
 edu/stanford/nlp/util/FixedPrioritiesPriorityQueue.class \
 edu/stanford/nlp/util/Function.class \
 edu/stanford/nlp/util/Generics.class \
 edu/stanford/nlp/util/HasInterval.class \
 edu/stanford/nlp/util/HasInterval\$1.class \
 edu/stanford/nlp/util/HashIndex.class \
 edu/stanford/nlp/util/HashIndex\$1.class \
 edu/stanford/nlp/util/HashIndex\$2.class \
 edu/stanford/nlp/util/HashableCoreMap.class \
 edu/stanford/nlp/util/HashableCoreMap\$HashableCoreMapException.class \
 edu/stanford/nlp/util/Index.class \
 edu/stanford/nlp/util/IntPair.class \
 edu/stanford/nlp/util/IntQuadruple.class \
 edu/stanford/nlp/util/IntTriple.class \
 edu/stanford/nlp/util/IntTuple.class \
 edu/stanford/nlp/util/IntUni.class \
 edu/stanford/nlp/util/Interner.class \
 edu/stanford/nlp/util/Interval.class \
 edu/stanford/nlp/util/Interval\$RelType.class \
 edu/stanford/nlp/util/IterableIterator.class \
 edu/stanford/nlp/util/MapFactory.class \
 edu/stanford/nlp/util/MapFactory\$1.class \
 edu/stanford/nlp/util/MapFactory\$ArrayMapFactory.class \
 edu/stanford/nlp/util/MapFactory\$HashMapFactory.class \
 edu/stanford/nlp/util/MapFactory\$IdentityHashMapFactory.class \
 edu/stanford/nlp/util/MapFactory\$LinkedHashMapFactory.class \
 edu/stanford/nlp/util/MapFactory\$TreeMapFactory.class \
 edu/stanford/nlp/util/MapFactory\$WeakHashMapFactory.class \
 edu/stanford/nlp/util/MetaClass.class \
 edu/stanford/nlp/util/MetaClass\$1.class \
 edu/stanford/nlp/util/MetaClass\$ClassCreationException.class \
 edu/stanford/nlp/util/MetaClass\$ClassFactory.class \
 edu/stanford/nlp/util/MetaClass\$ConstructorNotFoundException.class \
 edu/stanford/nlp/util/MutableDouble.class \
 edu/stanford/nlp/util/MutableInteger.class \
 edu/stanford/nlp/util/Pair.class \
 edu/stanford/nlp/util/Pair\$1.class \
 edu/stanford/nlp/util/Pair\$MutableInternedPair.class \
 edu/stanford/nlp/util/PriorityQueue.class \
 edu/stanford/nlp/util/ReflectionLoading.class \
 edu/stanford/nlp/util/ReflectionLoading\$ReflectionLoadingException.class \
 edu/stanford/nlp/util/Scored.class \
 edu/stanford/nlp/util/ScoredComparator.class \
 edu/stanford/nlp/util/ScoredObject.class \
 edu/stanford/nlp/util/Sets.class \
 edu/stanford/nlp/util/StreamGobbler.class \
 edu/stanford/nlp/util/StringUtils.class \
 edu/stanford/nlp/util/StringUtils\$1.class \
 edu/stanford/nlp/util/Timing.class \
 edu/stanford/nlp/util/Triple.class \
 edu/stanford/nlp/util/TypesafeMap.class \
 edu/stanford/nlp/util/TypesafeMap\$Key.class \
 edu/stanford/nlp/util/concurrent/SynchronizedInterner.class \
 edu/stanford/nlp/util/concurrent/SynchronizedInterner\$1.class \
 edu/stanford/nlp/util/logging/Color.class \
 edu/stanford/nlp/util/logging/LogRecordHandler.class \
 edu/stanford/nlp/util/logging/OutputHandler.class \
 edu/stanford/nlp/util/logging/OutputHandler\$1.class \
 edu/stanford/nlp/util/logging/OutputHandler\$TrackInfo.class \
 edu/stanford/nlp/util/logging/PrettyLoggable.class \
 edu/stanford/nlp/util/logging/PrettyLogger.class \
 edu/stanford/nlp/util/logging/PrettyLogger\$1.class \
 edu/stanford/nlp/util/logging/Redwood.class \
 edu/stanford/nlp/util/logging/Redwood\$1.class \
 edu/stanford/nlp/util/logging/Redwood\$2.class \
 edu/stanford/nlp/util/logging/Redwood\$3.class \
 edu/stanford/nlp/util/logging/Redwood\$4.class \
 edu/stanford/nlp/util/logging/Redwood\$5.class \
 edu/stanford/nlp/util/logging/Redwood\$6.class \
 edu/stanford/nlp/util/logging/Redwood\$7.class \
 edu/stanford/nlp/util/logging/Redwood\$ConsoleHandler.class \
 edu/stanford/nlp/util/logging/Redwood\$FileHandler.class \
 edu/stanford/nlp/util/logging/Redwood\$Flag.class \
 edu/stanford/nlp/util/logging/Redwood\$MessageType.class \
 edu/stanford/nlp/util/logging/Redwood\$Record.class \
 edu/stanford/nlp/util/logging/Redwood\$Record\$1.class \
 edu/stanford/nlp/util/logging/Redwood\$RecordHandlerTree.class \
 edu/stanford/nlp/util/logging/Redwood\$RecordHandlerTree\$1.class \
 edu/stanford/nlp/util/logging/Redwood\$RedwoodChannels.class \
 edu/stanford/nlp/util/logging/Redwood\$Util.class \
 edu/stanford/nlp/util/logging/Redwood\$Util\$1.class \
 edu/stanford/nlp/util/logging/Redwood\$Util\$Tantrum.class \
 edu/stanford/nlp/util/logging/RedwoodConfiguration.class \
 edu/stanford/nlp/util/logging/RedwoodConfiguration\$1.class \
 edu/stanford/nlp/util/logging/RedwoodConfiguration\$10.class \
 edu/stanford/nlp/util/logging/RedwoodConfiguration\$11.class \
 edu/stanford/nlp/util/logging/RedwoodConfiguration\$12.class \
 edu/stanford/nlp/util/logging/RedwoodConfiguration\$12\$1.class \
 edu/stanford/nlp/util/logging/RedwoodConfiguration\$13.class \
 edu/stanford/nlp/util/logging/RedwoodConfiguration\$14.class \
 edu/stanford/nlp/util/logging/RedwoodConfiguration\$15.class \
 edu/stanford/nlp/util/logging/RedwoodConfiguration\$2.class \
 edu/stanford/nlp/util/logging/RedwoodConfiguration\$3.class \
 edu/stanford/nlp/util/logging/RedwoodConfiguration\$4.class \
 edu/stanford/nlp/util/logging/RedwoodConfiguration\$5.class \
 edu/stanford/nlp/util/logging/RedwoodConfiguration\$6.class \
 edu/stanford/nlp/util/logging/RedwoodConfiguration\$7.class \
 edu/stanford/nlp/util/logging/RedwoodConfiguration\$8.class \
 edu/stanford/nlp/util/logging/RedwoodConfiguration\$9.class \
 edu/stanford/nlp/util/logging/RedwoodPrintStream.class \
 edu/stanford/nlp/util/logging/RedwoodPrintStream\$1.class \
 edu/stanford/nlp/util/logging/RepeatedRecordHandler.class \
 edu/stanford/nlp/util/logging/RepeatedRecordHandler\$1.class \
 edu/stanford/nlp/util/logging/RepeatedRecordHandler\$ApproximateRepeatSemantics.class \
 edu/stanford/nlp/util/logging/RepeatedRecordHandler\$ExactRepeatSemantics.class \
 edu/stanford/nlp/util/logging/RepeatedRecordHandler\$PendingType.class \
 edu/stanford/nlp/util/logging/RepeatedRecordHandler\$RepeatSemantics.class \
 edu/stanford/nlp/util/logging/RepeatedRecordHandler\$RepeatedRecordInfo.class \
 edu/stanford/nlp/util/logging/Style.class \
 edu/stanford/nlp/util/logging/VisibilityHandler.class \
 edu/stanford/nlp/util/logging/VisibilityHandler\$1.class \
 edu/stanford/nlp/util/logging/VisibilityHandler\$State.class \
 

Source files:

	edu/stanford/nlp/classify/AbstractLinearClassifierFactory.java
	edu/stanford/nlp/classify/AdaptedGaussianPriorObjectiveFunction.java
	edu/stanford/nlp/classify/BiasedLogConditionalObjectiveFunction.java
	edu/stanford/nlp/classify/BiasedLogisticObjectiveFunction.java
	edu/stanford/nlp/classify/Classifier.java
	edu/stanford/nlp/classify/ClassifierCreator.java
	edu/stanford/nlp/classify/ClassifierExample.java
	edu/stanford/nlp/classify/ClassifierFactory.java
	edu/stanford/nlp/classify/ColumnDataClassifier.java
	edu/stanford/nlp/classify/CrossValidator.java
	edu/stanford/nlp/classify/Dataset.java
	edu/stanford/nlp/classify/GeneralDataset.java
	edu/stanford/nlp/classify/GeneralizedExpectationObjectiveFunction.java
	edu/stanford/nlp/classify/LinearClassifier.java
	edu/stanford/nlp/classify/LinearClassifierFactory.java
	edu/stanford/nlp/classify/LogConditionalEqConstraintFunction.java
	edu/stanford/nlp/classify/LogConditionalObjectiveFunction.java
	edu/stanford/nlp/classify/LogPrior.java
	edu/stanford/nlp/classify/LogisticClassifier.java
	edu/stanford/nlp/classify/LogisticClassifierFactory.java
	edu/stanford/nlp/classify/LogisticObjectiveFunction.java
	edu/stanford/nlp/classify/NBLinearClassifierFactory.java
	edu/stanford/nlp/classify/NaiveBayesClassifier.java
	edu/stanford/nlp/classify/NaiveBayesClassifierFactory.java
	edu/stanford/nlp/classify/NominalDataReader.java
	edu/stanford/nlp/classify/PRCurve.java
	edu/stanford/nlp/classify/ProbabilisticClassifier.java
	edu/stanford/nlp/classify/ProbabilisticClassifierCreator.java
	edu/stanford/nlp/classify/RVFClassifier.java
	edu/stanford/nlp/classify/RVFDataset.java
	edu/stanford/nlp/classify/SemiSupervisedLogConditionalObjectiveFunction.java
	edu/stanford/nlp/classify/WeightedDataset.java
	edu/stanford/nlp/classify/classifier-manifest.txt
	edu/stanford/nlp/classify/package.html
	edu/stanford/nlp/io/BZip2PipedOutputStream.java
	edu/stanford/nlp/io/EncodingFileReader.java
	edu/stanford/nlp/io/IOUtils.java
	edu/stanford/nlp/io/RuntimeIOException.java
	edu/stanford/nlp/ling/AnnotationLookup.java
	edu/stanford/nlp/ling/BasicDatum.java
	edu/stanford/nlp/ling/CoreAnnotation.java
	edu/stanford/nlp/ling/CoreAnnotations.java
	edu/stanford/nlp/ling/CoreLabel.java
	edu/stanford/nlp/ling/Datum.java
	edu/stanford/nlp/ling/Featurizable.java
	edu/stanford/nlp/ling/HasCategory.java
	edu/stanford/nlp/ling/HasContext.java
	edu/stanford/nlp/ling/HasIndex.java
	edu/stanford/nlp/ling/HasOffset.java
	edu/stanford/nlp/ling/HasTag.java
	edu/stanford/nlp/ling/HasWord.java
	edu/stanford/nlp/ling/Label.java
	edu/stanford/nlp/ling/LabelFactory.java
	edu/stanford/nlp/ling/Labeled.java
	edu/stanford/nlp/ling/RVFDatum.java
	edu/stanford/nlp/ling/StringLabel.java
	edu/stanford/nlp/ling/StringLabelFactory.java
	edu/stanford/nlp/ling/TaggedWord.java
	edu/stanford/nlp/ling/TaggedWordFactory.java
	edu/stanford/nlp/ling/ValueLabel.java
	edu/stanford/nlp/ling/Word.java
	edu/stanford/nlp/ling/WordFactory.java
	edu/stanford/nlp/ling/WordLemmaTag.java
	edu/stanford/nlp/ling/WordLemmaTagFactory.java
	edu/stanford/nlp/ling/WordTag.java
	edu/stanford/nlp/ling/WordTagFactory.java
	edu/stanford/nlp/math/ADMath.java
	edu/stanford/nlp/math/ArrayMath.java
	edu/stanford/nlp/math/DoubleAD.java
	edu/stanford/nlp/math/SloppyMath.java
	edu/stanford/nlp/objectbank/IdentityFunction.java
	edu/stanford/nlp/objectbank/IteratorFromReaderFactory.java
	edu/stanford/nlp/objectbank/LineIterator.java
	edu/stanford/nlp/objectbank/ObjectBank.java
	edu/stanford/nlp/objectbank/ReaderIteratorFactory.java
	edu/stanford/nlp/optimization/AbstractCachingDiffFunction.java
	edu/stanford/nlp/optimization/AbstractStochasticCachingDiffFunction.java
	edu/stanford/nlp/optimization/AbstractStochasticCachingDiffUpdateFunction.java
	edu/stanford/nlp/optimization/CGMinimizer.java
	edu/stanford/nlp/optimization/DiffFloatFunction.java
	edu/stanford/nlp/optimization/DiffFunction.java
	edu/stanford/nlp/optimization/Evaluator.java
	edu/stanford/nlp/optimization/FloatFunction.java
	edu/stanford/nlp/optimization/Function.java
	edu/stanford/nlp/optimization/GoldenSectionLineSearch.java
	edu/stanford/nlp/optimization/HasEvaluators.java
	edu/stanford/nlp/optimization/HasInitial.java
	edu/stanford/nlp/optimization/HybridMinimizer.java
	edu/stanford/nlp/optimization/LineSearcher.java
	edu/stanford/nlp/optimization/Minimizer.java
	edu/stanford/nlp/optimization/QNMinimizer.java
	edu/stanford/nlp/optimization/SGDMinimizer.java
	edu/stanford/nlp/optimization/SGDToQNMinimizer.java
	edu/stanford/nlp/optimization/SMDMinimizer.java
	edu/stanford/nlp/optimization/SQNMinimizer.java
	edu/stanford/nlp/optimization/ScaledSGDMinimizer.java
	edu/stanford/nlp/optimization/StochasticCalculateMethods.java
	edu/stanford/nlp/optimization/StochasticDiffFunctionTester.java
	edu/stanford/nlp/optimization/StochasticInPlaceMinimizer.java
	edu/stanford/nlp/optimization/StochasticMinimizer.java
	edu/stanford/nlp/process/Morpha.java
	edu/stanford/nlp/process/Morphology.java
	edu/stanford/nlp/process/WordShapeClassifier.java
	edu/stanford/nlp/sequences/SeqClassifierFlags.java
	edu/stanford/nlp/stats/AbstractCounter.java
	edu/stanford/nlp/stats/AccuracyStats.java
	edu/stanford/nlp/stats/ClassicCounter.java
	edu/stanford/nlp/stats/Counter.java
	edu/stanford/nlp/stats/Counters.java
	edu/stanford/nlp/stats/Distribution.java
	edu/stanford/nlp/stats/IntCounter.java
	edu/stanford/nlp/stats/MultiClassAccuracyStats.java
	edu/stanford/nlp/stats/ProbabilityDistribution.java
	edu/stanford/nlp/stats/Sampler.java
	edu/stanford/nlp/stats/Scorer.java
	edu/stanford/nlp/stats/SimpleGoodTuring.java
	edu/stanford/nlp/stats/TwoDimensionalCounter.java
	edu/stanford/nlp/stats/TwoDimensionalCounterInterface.java
	edu/stanford/nlp/util/AbstractIterator.java
	edu/stanford/nlp/util/ArrayCoreMap.java
	edu/stanford/nlp/util/ArrayIterable.java
	edu/stanford/nlp/util/ArrayMap.java
	edu/stanford/nlp/util/ArrayUtils.java
	edu/stanford/nlp/util/BinaryHeapPriorityQueue.java
	edu/stanford/nlp/util/ByteStreamGobbler.java
	edu/stanford/nlp/util/CollectionFactory.java
	edu/stanford/nlp/util/CollectionUtils.java
	edu/stanford/nlp/util/CoreMap.java
	edu/stanford/nlp/util/ErasureUtils.java
	edu/stanford/nlp/util/Factory.java
	edu/stanford/nlp/util/Filter.java
	edu/stanford/nlp/util/FixedPrioritiesPriorityQueue.java
	edu/stanford/nlp/util/Function.java
	edu/stanford/nlp/util/Generics.java
	edu/stanford/nlp/util/HasInterval.java
	edu/stanford/nlp/util/HashIndex.java
	edu/stanford/nlp/util/HashableCoreMap.java
	edu/stanford/nlp/util/Index.java
	edu/stanford/nlp/util/IntPair.java
	edu/stanford/nlp/util/IntQuadruple.java
	edu/stanford/nlp/util/IntTriple.java
	edu/stanford/nlp/util/IntTuple.java
	edu/stanford/nlp/util/IntUni.java
	edu/stanford/nlp/util/Interner.java
	edu/stanford/nlp/util/Interval.java
	edu/stanford/nlp/util/IterableIterator.java
	edu/stanford/nlp/util/MapFactory.java
	edu/stanford/nlp/util/MetaClass.java
	edu/stanford/nlp/util/MutableDouble.java
	edu/stanford/nlp/util/MutableInteger.java
	edu/stanford/nlp/util/Pair.java
	edu/stanford/nlp/util/PriorityQueue.java
	edu/stanford/nlp/util/ReflectionLoading.java
	edu/stanford/nlp/util/Scored.java
	edu/stanford/nlp/util/ScoredComparator.java
	edu/stanford/nlp/util/ScoredObject.java
	edu/stanford/nlp/util/Sets.java
	edu/stanford/nlp/util/StreamGobbler.java
	edu/stanford/nlp/util/StringUtils.java
	edu/stanford/nlp/util/Timing.java
	edu/stanford/nlp/util/Triple.java
	edu/stanford/nlp/util/TypesafeMap.java
	edu/stanford/nlp/util/concurrent/SynchronizedInterner.java
	edu/stanford/nlp/util/logging/Color.java
	edu/stanford/nlp/util/logging/LogRecordHandler.java
	edu/stanford/nlp/util/logging/OutputHandler.java
	edu/stanford/nlp/util/logging/PrettyLoggable.java
	edu/stanford/nlp/util/logging/PrettyLogger.java
	edu/stanford/nlp/util/logging/Redwood.java
	edu/stanford/nlp/util/logging/RedwoodConfiguration.java
	edu/stanford/nlp/util/logging/RedwoodPrintStream.java
	edu/stanford/nlp/util/logging/RepeatedRecordHandler.java
	edu/stanford/nlp/util/logging/Style.java
	edu/stanford/nlp/util/logging/VisibilityHandler.java

#####
GENERATING JAR FILE
#####

JAR file:
	/u/nlp/distrib/stanford-classifier-2012-05-22/stanford-classifier-src-2012-05-22.jar
Root directory:
	/user/horatio/releases/v1.3.2/projects/core/src

jar cf /juicy/u44/u/nlp/distrib/stanford-classifier-2012-05-22/stanford-classifier-src-2012-05-22.jar edu/stanford/nlp/classify/AbstractLinearClassifierFactory.java \
 edu/stanford/nlp/classify/AdaptedGaussianPriorObjectiveFunction.java \
 edu/stanford/nlp/classify/BiasedLogConditionalObjectiveFunction.java \
 edu/stanford/nlp/classify/BiasedLogisticObjectiveFunction.java \
 edu/stanford/nlp/classify/Classifier.java \
 edu/stanford/nlp/classify/ClassifierCreator.java \
 edu/stanford/nlp/classify/ClassifierExample.java \
 edu/stanford/nlp/classify/ClassifierFactory.java \
 edu/stanford/nlp/classify/ColumnDataClassifier.java \
 edu/stanford/nlp/classify/CrossValidator.java \
 edu/stanford/nlp/classify/Dataset.java \
 edu/stanford/nlp/classify/GeneralDataset.java \
 edu/stanford/nlp/classify/GeneralizedExpectationObjectiveFunction.java \
 edu/stanford/nlp/classify/LinearClassifier.java \
 edu/stanford/nlp/classify/LinearClassifierFactory.java \
 edu/stanford/nlp/classify/LogConditionalEqConstraintFunction.java \
 edu/stanford/nlp/classify/LogConditionalObjectiveFunction.java \
 edu/stanford/nlp/classify/LogPrior.java \
 edu/stanford/nlp/classify/LogisticClassifier.java \
 edu/stanford/nlp/classify/LogisticClassifierFactory.java \
 edu/stanford/nlp/classify/LogisticObjectiveFunction.java \
 edu/stanford/nlp/classify/NBLinearClassifierFactory.java \
 edu/stanford/nlp/classify/NaiveBayesClassifier.java \
 edu/stanford/nlp/classify/NaiveBayesClassifierFactory.java \
 edu/stanford/nlp/classify/NominalDataReader.java \
 edu/stanford/nlp/classify/PRCurve.java \
 edu/stanford/nlp/classify/ProbabilisticClassifier.java \
 edu/stanford/nlp/classify/ProbabilisticClassifierCreator.java \
 edu/stanford/nlp/classify/RVFClassifier.java \
 edu/stanford/nlp/classify/RVFDataset.java \
 edu/stanford/nlp/classify/SemiSupervisedLogConditionalObjectiveFunction.java \
 edu/stanford/nlp/classify/WeightedDataset.java \
 edu/stanford/nlp/classify/classifier-manifest.txt \
 edu/stanford/nlp/classify/package.html \
 edu/stanford/nlp/io/BZip2PipedOutputStream.java \
 edu/stanford/nlp/io/EncodingFileReader.java \
 edu/stanford/nlp/io/IOUtils.java \
 edu/stanford/nlp/io/RuntimeIOException.java \
 edu/stanford/nlp/ling/AnnotationLookup.java \
 edu/stanford/nlp/ling/BasicDatum.java \
 edu/stanford/nlp/ling/CoreAnnotation.java \
 edu/stanford/nlp/ling/CoreAnnotations.java \
 edu/stanford/nlp/ling/CoreLabel.java \
 edu/stanford/nlp/ling/Datum.java \
 edu/stanford/nlp/ling/Featurizable.java \
 edu/stanford/nlp/ling/HasCategory.java \
 edu/stanford/nlp/ling/HasContext.java \
 edu/stanford/nlp/ling/HasIndex.java \
 edu/stanford/nlp/ling/HasOffset.java \
 edu/stanford/nlp/ling/HasTag.java \
 edu/stanford/nlp/ling/HasWord.java \
 edu/stanford/nlp/ling/Label.java \
 edu/stanford/nlp/ling/LabelFactory.java \
 edu/stanford/nlp/ling/Labeled.java \
 edu/stanford/nlp/ling/RVFDatum.java \
 edu/stanford/nlp/ling/StringLabel.java \
 edu/stanford/nlp/ling/StringLabelFactory.java \
 edu/stanford/nlp/ling/TaggedWord.java \
 edu/stanford/nlp/ling/TaggedWordFactory.java \
 edu/stanford/nlp/ling/ValueLabel.java \
 edu/stanford/nlp/ling/Word.java \
 edu/stanford/nlp/ling/WordFactory.java \
 edu/stanford/nlp/ling/WordLemmaTag.java \
 edu/stanford/nlp/ling/WordLemmaTagFactory.java \
 edu/stanford/nlp/ling/WordTag.java \
 edu/stanford/nlp/ling/WordTagFactory.java \
 edu/stanford/nlp/math/ADMath.java \
 edu/stanford/nlp/math/ArrayMath.java \
 edu/stanford/nlp/math/DoubleAD.java \
 edu/stanford/nlp/math/SloppyMath.java \
 edu/stanford/nlp/objectbank/IdentityFunction.java \
 edu/stanford/nlp/objectbank/IteratorFromReaderFactory.java \
 edu/stanford/nlp/objectbank/LineIterator.java \
 edu/stanford/nlp/objectbank/ObjectBank.java \
 edu/stanford/nlp/objectbank/ReaderIteratorFactory.java \
 edu/stanford/nlp/optimization/AbstractCachingDiffFunction.java \
 edu/stanford/nlp/optimization/AbstractStochasticCachingDiffFunction.java \
 edu/stanford/nlp/optimization/AbstractStochasticCachingDiffUpdateFunction.java \
 edu/stanford/nlp/optimization/CGMinimizer.java \
 edu/stanford/nlp/optimization/DiffFloatFunction.java \
 edu/stanford/nlp/optimization/DiffFunction.java \
 edu/stanford/nlp/optimization/Evaluator.java \
 edu/stanford/nlp/optimization/FloatFunction.java \
 edu/stanford/nlp/optimization/Function.java \
 edu/stanford/nlp/optimization/GoldenSectionLineSearch.java \
 edu/stanford/nlp/optimization/HasEvaluators.java \
 edu/stanford/nlp/optimization/HasInitial.java \
 edu/stanford/nlp/optimization/HybridMinimizer.java \
 edu/stanford/nlp/optimization/LineSearcher.java \
 edu/stanford/nlp/optimization/Minimizer.java \
 edu/stanford/nlp/optimization/QNMinimizer.java \
 edu/stanford/nlp/optimization/SGDMinimizer.java \
 edu/stanford/nlp/optimization/SGDToQNMinimizer.java \
 edu/stanford/nlp/optimization/SMDMinimizer.java \
 edu/stanford/nlp/optimization/SQNMinimizer.java \
 edu/stanford/nlp/optimization/ScaledSGDMinimizer.java \
 edu/stanford/nlp/optimization/StochasticCalculateMethods.java \
 edu/stanford/nlp/optimization/StochasticDiffFunctionTester.java \
 edu/stanford/nlp/optimization/StochasticInPlaceMinimizer.java \
 edu/stanford/nlp/optimization/StochasticMinimizer.java \
 edu/stanford/nlp/process/Morpha.java \
 edu/stanford/nlp/process/Morphology.java \
 edu/stanford/nlp/process/WordShapeClassifier.java \
 edu/stanford/nlp/sequences/SeqClassifierFlags.java \
 edu/stanford/nlp/stats/AbstractCounter.java \
 edu/stanford/nlp/stats/AccuracyStats.java \
 edu/stanford/nlp/stats/ClassicCounter.java \
 edu/stanford/nlp/stats/Counter.java \
 edu/stanford/nlp/stats/Counters.java \
 edu/stanford/nlp/stats/Distribution.java \
 edu/stanford/nlp/stats/IntCounter.java \
 edu/stanford/nlp/stats/MultiClassAccuracyStats.java \
 edu/stanford/nlp/stats/ProbabilityDistribution.java \
 edu/stanford/nlp/stats/Sampler.java \
 edu/stanford/nlp/stats/Scorer.java \
 edu/stanford/nlp/stats/SimpleGoodTuring.java \
 edu/stanford/nlp/stats/TwoDimensionalCounter.java \
 edu/stanford/nlp/stats/TwoDimensionalCounterInterface.java \
 edu/stanford/nlp/util/AbstractIterator.java \
 edu/stanford/nlp/util/ArrayCoreMap.java \
 edu/stanford/nlp/util/ArrayIterable.java \
 edu/stanford/nlp/util/ArrayMap.java \
 edu/stanford/nlp/util/ArrayUtils.java \
 edu/stanford/nlp/util/BinaryHeapPriorityQueue.java \
 edu/stanford/nlp/util/ByteStreamGobbler.java \
 edu/stanford/nlp/util/CollectionFactory.java \
 edu/stanford/nlp/util/CollectionUtils.java \
 edu/stanford/nlp/util/CoreMap.java \
 edu/stanford/nlp/util/ErasureUtils.java \
 edu/stanford/nlp/util/Factory.java \
 edu/stanford/nlp/util/Filter.java \
 edu/stanford/nlp/util/FixedPrioritiesPriorityQueue.java \
 edu/stanford/nlp/util/Function.java \
 edu/stanford/nlp/util/Generics.java \
 edu/stanford/nlp/util/HasInterval.java \
 edu/stanford/nlp/util/HashIndex.java \
 edu/stanford/nlp/util/HashableCoreMap.java \
 edu/stanford/nlp/util/Index.java \
 edu/stanford/nlp/util/IntPair.java \
 edu/stanford/nlp/util/IntQuadruple.java \
 edu/stanford/nlp/util/IntTriple.java \
 edu/stanford/nlp/util/IntTuple.java \
 edu/stanford/nlp/util/IntUni.java \
 edu/stanford/nlp/util/Interner.java \
 edu/stanford/nlp/util/Interval.java \
 edu/stanford/nlp/util/IterableIterator.java \
 edu/stanford/nlp/util/MapFactory.java \
 edu/stanford/nlp/util/MetaClass.java \
 edu/stanford/nlp/util/MutableDouble.java \
 edu/stanford/nlp/util/MutableInteger.java \
 edu/stanford/nlp/util/Pair.java \
 edu/stanford/nlp/util/PriorityQueue.java \
 edu/stanford/nlp/util/ReflectionLoading.java \
 edu/stanford/nlp/util/Scored.java \
 edu/stanford/nlp/util/ScoredComparator.java \
 edu/stanford/nlp/util/ScoredObject.java \
 edu/stanford/nlp/util/Sets.java \
 edu/stanford/nlp/util/StreamGobbler.java \
 edu/stanford/nlp/util/StringUtils.java \
 edu/stanford/nlp/util/Timing.java \
 edu/stanford/nlp/util/Triple.java \
 edu/stanford/nlp/util/TypesafeMap.java \
 edu/stanford/nlp/util/concurrent/SynchronizedInterner.java \
 edu/stanford/nlp/util/logging/Color.java \
 edu/stanford/nlp/util/logging/LogRecordHandler.java \
 edu/stanford/nlp/util/logging/OutputHandler.java \
 edu/stanford/nlp/util/logging/PrettyLoggable.java \
 edu/stanford/nlp/util/logging/PrettyLogger.java \
 edu/stanford/nlp/util/logging/Redwood.java \
 edu/stanford/nlp/util/logging/RedwoodConfiguration.java \
 edu/stanford/nlp/util/logging/RedwoodPrintStream.java \
 edu/stanford/nlp/util/logging/RepeatedRecordHandler.java \
 edu/stanford/nlp/util/logging/Style.java \
 edu/stanford/nlp/util/logging/VisibilityHandler.java \
 

cp $classjar stanford-classifier.jar
rm $dir/depdump




mkdir $dir/src
cd $dir/src
unzip $srcjar
Archive:  /u/nlp/distrib/stanford-classifier-2012-05-22/stanford-classifier-src-2012-05-22.jar
   creating: META-INF/
  inflating: META-INF/MANIFEST.MF    
  inflating: edu/stanford/nlp/classify/AbstractLinearClassifierFactory.java  
  inflating: edu/stanford/nlp/classify/AdaptedGaussianPriorObjectiveFunction.java  
  inflating: edu/stanford/nlp/classify/BiasedLogConditionalObjectiveFunction.java  
  inflating: edu/stanford/nlp/classify/BiasedLogisticObjectiveFunction.java  
  inflating: edu/stanford/nlp/classify/Classifier.java  
  inflating: edu/stanford/nlp/classify/ClassifierCreator.java  
  inflating: edu/stanford/nlp/classify/ClassifierExample.java  
  inflating: edu/stanford/nlp/classify/ClassifierFactory.java  
  inflating: edu/stanford/nlp/classify/ColumnDataClassifier.java  
  inflating: edu/stanford/nlp/classify/CrossValidator.java  
  inflating: edu/stanford/nlp/classify/Dataset.java  
  inflating: edu/stanford/nlp/classify/GeneralDataset.java  
  inflating: edu/stanford/nlp/classify/GeneralizedExpectationObjectiveFunction.java  
  inflating: edu/stanford/nlp/classify/LinearClassifier.java  
  inflating: edu/stanford/nlp/classify/LinearClassifierFactory.java  
  inflating: edu/stanford/nlp/classify/LogConditionalEqConstraintFunction.java  
  inflating: edu/stanford/nlp/classify/LogConditionalObjectiveFunction.java  
  inflating: edu/stanford/nlp/classify/LogPrior.java  
  inflating: edu/stanford/nlp/classify/LogisticClassifier.java  
  inflating: edu/stanford/nlp/classify/LogisticClassifierFactory.java  
  inflating: edu/stanford/nlp/classify/LogisticObjectiveFunction.java  
  inflating: edu/stanford/nlp/classify/NBLinearClassifierFactory.java  
  inflating: edu/stanford/nlp/classify/NaiveBayesClassifier.java  
  inflating: edu/stanford/nlp/classify/NaiveBayesClassifierFactory.java  
  inflating: edu/stanford/nlp/classify/NominalDataReader.java  
  inflating: edu/stanford/nlp/classify/PRCurve.java  
  inflating: edu/stanford/nlp/classify/ProbabilisticClassifier.java  
  inflating: edu/stanford/nlp/classify/ProbabilisticClassifierCreator.java  
  inflating: edu/stanford/nlp/classify/RVFClassifier.java  
  inflating: edu/stanford/nlp/classify/RVFDataset.java  
  inflating: edu/stanford/nlp/classify/SemiSupervisedLogConditionalObjectiveFunction.java  
  inflating: edu/stanford/nlp/classify/WeightedDataset.java  
  inflating: edu/stanford/nlp/classify/classifier-manifest.txt  
  inflating: edu/stanford/nlp/classify/package.html  
  inflating: edu/stanford/nlp/io/BZip2PipedOutputStream.java  
  inflating: edu/stanford/nlp/io/EncodingFileReader.java  
  inflating: edu/stanford/nlp/io/IOUtils.java  
  inflating: edu/stanford/nlp/io/RuntimeIOException.java  
  inflating: edu/stanford/nlp/ling/AnnotationLookup.java  
  inflating: edu/stanford/nlp/ling/BasicDatum.java  
  inflating: edu/stanford/nlp/ling/CoreAnnotation.java  
  inflating: edu/stanford/nlp/ling/CoreAnnotations.java  
  inflating: edu/stanford/nlp/ling/CoreLabel.java  
  inflating: edu/stanford/nlp/ling/Datum.java  
  inflating: edu/stanford/nlp/ling/Featurizable.java  
  inflating: edu/stanford/nlp/ling/HasCategory.java  
  inflating: edu/stanford/nlp/ling/HasContext.java  
  inflating: edu/stanford/nlp/ling/HasIndex.java  
  inflating: edu/stanford/nlp/ling/HasOffset.java  
  inflating: edu/stanford/nlp/ling/HasTag.java  
  inflating: edu/stanford/nlp/ling/HasWord.java  
  inflating: edu/stanford/nlp/ling/Label.java  
  inflating: edu/stanford/nlp/ling/LabelFactory.java  
  inflating: edu/stanford/nlp/ling/Labeled.java  
  inflating: edu/stanford/nlp/ling/RVFDatum.java  
  inflating: edu/stanford/nlp/ling/StringLabel.java  
  inflating: edu/stanford/nlp/ling/StringLabelFactory.java  
  inflating: edu/stanford/nlp/ling/TaggedWord.java  
  inflating: edu/stanford/nlp/ling/TaggedWordFactory.java  
  inflating: edu/stanford/nlp/ling/ValueLabel.java  
  inflating: edu/stanford/nlp/ling/Word.java  
  inflating: edu/stanford/nlp/ling/WordFactory.java  
  inflating: edu/stanford/nlp/ling/WordLemmaTag.java  
  inflating: edu/stanford/nlp/ling/WordLemmaTagFactory.java  
  inflating: edu/stanford/nlp/ling/WordTag.java  
  inflating: edu/stanford/nlp/ling/WordTagFactory.java  
  inflating: edu/stanford/nlp/math/ADMath.java  
  inflating: edu/stanford/nlp/math/ArrayMath.java  
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cd $dir
mkdir javadoc
javadoc -d javadoc -sourcepath src -J-mx256m -subpackages edu.stanford.nlp -author -bottom '<FONT SIZE=2><A HREF="http://nlp.stanford.edu">Stanford NLP Group</A></FONT>' -doctitle "Stanford JavaNLP Classifier API Documentation" -link "http://java.sun.com/j2se/1.6.0/docs/api" -windowtitle "Stanford JavaNLP API"
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Standard Doclet version 1.6.0_27
Building tree for all the packages and classes...
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198 warnings



mkdir examples
cp /u/nlp/data/pnp/cheese2007.prop ./examples
cp /u/nlp/data/pnp/charngram.train ./examples/cheeseDisease.train
cp /u/nlp/data/pnp/charngram.test ./examples/cheeseDisease.test
cp /u/nlp/data/IrisExample/* ./examples
cp $JAVANLP_HOME/projects/core/doc/classify/* .
rm -f ./*~
rm: No match.
rm -f ./examples/*~
rm: No match.




sed '1d' $JAVANLP_HOME/projects/core/src/edu/stanford/nlp/classify/demo/ClassifierDemo.java > $dir/ClassifierDemo.java




cd $dir
ant || exit
Buildfile: /juicy/u44/u/nlp/distrib/stanford-classifier-2012-05-22/build.xml

prepare:
    [mkdir] Created dir: /juicy/u44/u/nlp/distrib/stanford-classifier-2012-05-22/classes

compile:
    [javac] /juicy/u44/u/nlp/distrib/stanford-classifier-2012-05-22/build.xml:99: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
    [javac] Compiling 172 source files to /juicy/u44/u/nlp/distrib/stanford-classifier-2012-05-22/classes
    [javac] Note: /juicy/u44/u/nlp/distrib/stanford-classifier-2012-05-22/src/edu/stanford/nlp/classify/AbstractLinearClassifierFactory.java uses or overrides a deprecated API.
    [javac] Note: Recompile with -Xlint:deprecation for details.
    [javac] Note: Some input files use unchecked or unsafe operations.
    [javac] Note: Recompile with -Xlint:unchecked for details.

BUILD SUCCESSFUL
Total time: 5 seconds




cd $dir
rm $srcjar
zip -r $srczip src
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  adding: javadoc/edu/stanford/nlp/optimization/CGMinimizer.html (deflated 83%)
  adding: javadoc/edu/stanford/nlp/optimization/QNMinimizer.eLineSearch.html (deflated 84%)
  adding: javadoc/edu/stanford/nlp/optimization/HybridMinimizer.html (deflated 85%)
  adding: javadoc/edu/stanford/nlp/optimization/QNMinimizer.QNInfo.html (deflated 87%)
  adding: javadoc/edu/stanford/nlp/optimization/AbstractStochasticCachingDiffFunction.html (deflated 87%)
  adding: javadoc/edu/stanford/nlp/optimization/package-frame.html (deflated 83%)
  adding: javadoc/edu/stanford/nlp/optimization/QNMinimizer.eState.html (deflated 85%)
  adding: javadoc/edu/stanford/nlp/optimization/SGDMinimizer.html (deflated 88%)
  adding: javadoc/edu/stanford/nlp/optimization/AbstractCachingDiffFunction.html (deflated 86%)
  adding: javadoc/edu/stanford/nlp/optimization/StochasticMinimizer.InvalidElementException.html (deflated 84%)
  adding: javadoc/allclasses-frame.html (deflated 92%)
rm -rf javadoc
rm -rf classes




cd ..
rm -rf $predir.tgz
tar -czf $predir.tgz $predir
