# Autogenerated by nbdev

d = { 'settings': { 'branch': 'main',
                'doc_baseurl': '/DiffPALM',
                'doc_host': 'https://Bitbol-Lab.github.io',
                'git_url': 'https://github.com/Bitbol-Lab/DiffPALM',
                'lib_path': 'diffpalm'},
  'syms': { 'diffpalm.core': { 'diffpalm.core.DCN': ('core.html#dcn', 'diffpalm/core.py'),
                               'diffpalm.core.DiffPALM': ('core.html#diffpalm', 'diffpalm/core.py'),
                               'diffpalm.core.DiffPALM.__init__': ('core.html#diffpalm.__init__', 'diffpalm/core.py'),
                               'diffpalm.core.DiffPALM.forward': ('core.html#diffpalm.forward', 'diffpalm/core.py'),
                               'diffpalm.core.DiffPALM.target_loss': ('core.html#diffpalm.target_loss', 'diffpalm/core.py'),
                               'diffpalm.core.DiffPALM.train': ('core.html#diffpalm.train', 'diffpalm/core.py'),
                               'diffpalm.core.PermutationsMixin': ('core.html#permutationsmixin', 'diffpalm/core.py'),
                               'diffpalm.core.PermutationsMixin._init_log_alpha': ( 'core.html#permutationsmixin._init_log_alpha',
                                                                                    'diffpalm/core.py'),
                               'diffpalm.core.PermutationsMixin._validator': ('core.html#permutationsmixin._validator', 'diffpalm/core.py'),
                               'diffpalm.core.PermutationsMixin.plot_real_time': ( 'core.html#permutationsmixin.plot_real_time',
                                                                                   'diffpalm/core.py')},
            'diffpalm.datasets': { 'diffpalm.datasets.dataset_tokenizer': ('datasets.html#dataset_tokenizer', 'diffpalm/datasets.py'),
                                   'diffpalm.datasets.generate_dataset': ('datasets.html#generate_dataset', 'diffpalm/datasets.py'),
                                   'diffpalm.datasets.tokenizer': ('datasets.html#tokenizer', 'diffpalm/datasets.py')},
            'diffpalm.gumbel_sinkhorn_utils': { 'diffpalm.gumbel_sinkhorn_utils.MSA_inverse_permutation': ( 'gumbel_sinkhorn_utils.html#msa_inverse_permutation',
                                                                                                            'diffpalm/gumbel_sinkhorn_utils.py'),
                                                'diffpalm.gumbel_sinkhorn_utils.MSA_inverse_permutation_batch': ( 'gumbel_sinkhorn_utils.html#msa_inverse_permutation_batch',
                                                                                                                  'diffpalm/gumbel_sinkhorn_utils.py'),
                                                'diffpalm.gumbel_sinkhorn_utils.gen_assignment': ( 'gumbel_sinkhorn_utils.html#gen_assignment',
                                                                                                   'diffpalm/gumbel_sinkhorn_utils.py'),
                                                'diffpalm.gumbel_sinkhorn_utils.gumbel_matching': ( 'gumbel_sinkhorn_utils.html#gumbel_matching',
                                                                                                    'diffpalm/gumbel_sinkhorn_utils.py'),
                                                'diffpalm.gumbel_sinkhorn_utils.gumbel_sinkhorn': ( 'gumbel_sinkhorn_utils.html#gumbel_sinkhorn',
                                                                                                    'diffpalm/gumbel_sinkhorn_utils.py'),
                                                'diffpalm.gumbel_sinkhorn_utils.inverse_permutation': ( 'gumbel_sinkhorn_utils.html#inverse_permutation',
                                                                                                        'diffpalm/gumbel_sinkhorn_utils.py'),
                                                'diffpalm.gumbel_sinkhorn_utils.log_sinkhorn_norm': ( 'gumbel_sinkhorn_utils.html#log_sinkhorn_norm',
                                                                                                      'diffpalm/gumbel_sinkhorn_utils.py'),
                                                'diffpalm.gumbel_sinkhorn_utils.sample_uniform': ( 'gumbel_sinkhorn_utils.html#sample_uniform',
                                                                                                   'diffpalm/gumbel_sinkhorn_utils.py'),
                                                'diffpalm.gumbel_sinkhorn_utils.sinkhorn_norm': ( 'gumbel_sinkhorn_utils.html#sinkhorn_norm',
                                                                                                  'diffpalm/gumbel_sinkhorn_utils.py')},
            'diffpalm.msa_parsing': { 'diffpalm.msa_parsing.read_msa': ('msa_parsing.html#read_msa', 'diffpalm/msa_parsing.py'),
                                      'diffpalm.msa_parsing.read_sequence': ('msa_parsing.html#read_sequence', 'diffpalm/msa_parsing.py'),
                                      'diffpalm.msa_parsing.remove_insertions': ( 'msa_parsing.html#remove_insertions',
                                                                                  'diffpalm/msa_parsing.py')}}}
